Disable internal Bluetooth

What is the internal BT device, and what is the USB BT dongle you’re trying to load?

Bluetoothctl allows switching between different BT controllers on the box.
show bluetooth devices - bluetoothctl list
select active bluetooth device - bluetoothctl select <mac-of-bt-device>

Do you know if CE supports the BT chip in your USB dongle? Blacklisting a module prevents that BT device from loading, it doesn’t disable Bluetooth. When you say Bluetooth is still visible after blacklisting, visible how?