Ok, the “issue” is caused because of done video calibration with 4k GUI but with GUI scaling enabled. So “wrong” 1080p values are then stored in GUISettings.xml.
Open SSH connection and run this:
systemctl stop kodi; xmlstarlet ed -L -d "//settings/resolutions" /storage/.kodi/userdata/guisettings.xml; systemctl start kodi;
Video calibration will be removed but Kodi show up normal.
So adjust again the video calibration afterwards when need.